Next-Generation Analytical Methods for Understanding Biological Nutrient Removal Processes

Project Information Summary

The project will evaluate how next-generation molecular tools (e.g., metagenomics, metatranscriptomics, and metaproteomics) can support biological nutrient removal (BNR) operations. A key objective will be to provide guidance on selecting and implementing appropriate workflows to enable translation of advanced multi-omics science into practical, cost-effective tools that utilities can use to better monitor and optimize BNR processes. 

Background and Project Rationale

As water resource recovery facilities (WRRFs) face increasingly stringent effluent limits, rising energy and chemical costs, and the challenge of meeting nutrient targets within limited facility footprints, gaining a deeper understanding of the microbial communities that underpin BNR processes has become essential.

‘Omics tools are advanced molecular methods that identify what microorganisms are present, what they are capable of, and how active they are. ‘Omics tools can potentially provide a direct link between process performance and the biology driving BNR performance, enabling more informed monitoring, troubleshooting, and optimization.

However, adopting ‘omics tools for routine use at WRRFs remains elusive. Current approaches often require specialized expertise, have long data turnaround times, and may appear to involve costs that are prohibitive for many utilities. The potential for applying ‘omics for improving BNR processes has not yet been realized.

This project aims to address these current barriers by creating streamlined, utility-ready approaches that make ‘omics information easier to generate, interpret, and apply in routine decision-making.

Research Approach

The approach to this research project consists of the following tasks:

  1. Knowledge synthesis – Conduct a comprehensive review of existing ‘omics tools and gather utility perspectives through a technology assessment and survey.
  2. HOMES workflow and development and validation – Develop the Harmonizing ‘Omics for Managing Environmental Systems (HOMES) workflow and validate it using integrated multi-omics data from BNR case studies. Collaboration with multiple full-scale WRRFs will ensure that the workflow will be based on real operational needs across a range of BNR configurations and address processes including low dissolved oxygen (DO) BNR, Enhanced Biological Phosphorous Removal (EBPR), and partial denitrification-annamox (PdNA). 
  3. Guidance and outreach – Produce practical guidance documents and deliver a workshop to support utility adoption of the HOMES workflow. 

Deliverables

The deliverables expected from this project are the HOMES workflow (available free and open source on GitHub), practical guidance materials, and a workshop to support utility implementation. Ultimately, this work will help utilities improve reliability, reduce operating costs, and better meet tightening nutrient limits by leveraging the biological information present in BNR treatment systems.